Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs117406136 chr16:89974605 C/T 0.000167 175 25.87 20.28 36.37 KM Plot
PCPG rs117421337 chr10:69778282 G/A 0 175 25.87 18.2 2.28 KM Plot
PCPG rs11743264 chr5:171531730 G/C 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs117451889 chr7:36162194 C/A 0.000441 177 25.67 24.5 14.37 KM Plot
PCPG rs11746193 chr5:171529468 C/T 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs11746316 chr5:171529624 G/A 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs11746419 chr5:171529968 G/T 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs11746714 chr5:171531594 T/C 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs11748171 chr5:13828842 G/A 6.3E-5 176 27.33 19.87 19.28 KM Plot
PCPG rs117496261 chr10:69742843 A/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11749706 chr5:171531662 A/G 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs117525404 chr10:29827396 T/C 7.42E-11 173 25.6 22.05 10.3 KM Plot
PCPG rs117544194 chr10:69787908 C/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117607247 chr10:69840353 T/A 0 174 25.87 24.7 2.28 KM Plot
PCPG rs11762354 chr7:66313904 G/A 0.000223 177 24.85 29.57 33.17 KM Plot